| Jul 08, 2026 | Our paper GATSBI: Improving context-aware protein embeddings through biologically motivated data splits was presented at ISMB 2026 and appears in Bioinformatics.  |
| Sep 15, 2025 | New paper out in PLOS Computational Biology: Paying attention to attention: High attention sites as indicators of protein family and function in language models. |
| Jun 01, 2025 | Pool PaRTI, our PageRank-based pooling method for protein sequence representations, is published in Bioinformatics. Code is available on GitHub. |